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Genome-Wide CRISPR Screen Identifies Noncanonical NF-κB Signaling as a Regulator of Epithelial Homeostasis

dc.contributor.advisorTyska, Matthew
dc.creatorFomicheva, Maria
dc.date.accessioned2021-03-18T16:03:59Z
dc.date.available2021-03-18T16:03:59Z
dc.date.created2021-01
dc.date.issued2021-01-06
dc.date.submittedJanuary 2021
dc.identifier.urihttp://hdl.handle.net/1803/16439
dc.description.abstractEpithelial cells possess intrinsic mechanisms to maintain an appropriate cell density for normal tissue morphogenesis and homeostasis. Defects in such mechanisms likely contribute to hyperplasia and cancer initiation. To identify genes that regulate the density-dependent proliferation of murine mammary epithelial cells, we developed a fluorescence-activated cell sorting assay based on fluorescence ubiquitination cell cycle indicator, which marks different stages of the cell cycle with distinct fluorophores. Using this powerful assay, we performed a genome-wide CRISPR/Cas9 knockout screen, selecting for cells that proliferate normally at low density but continue to divide at high density. Unexpectedly, one top hit was Traf3, a negative regulator of NF-κB signaling that has never previously been linked to density-dependent proliferation. We demonstrate that loss of Traf3 specifically activates noncanonical NF-κB signaling. This in turn triggers an innate immune response and drives cell division independently of known density-dependent proliferation mechanisms, including YAP/TAZ signaling and cyclin-dependent kinase inhibitors, by blocking entry into quiescence.
dc.format.mimetypeapplication/pdf
dc.language.isoen
dc.subjectquiescence
dc.subjectepithelia
dc.subjecthomeostasis
dc.subjectcell cycle
dc.subjectinnate immunity
dc.subjectcancer
dc.titleGenome-Wide CRISPR Screen Identifies Noncanonical NF-κB Signaling as a Regulator of Epithelial Homeostasis
dc.typeThesis
dc.date.updated2021-03-18T16:04:00Z
dc.type.materialtext
thesis.degree.namePhD
thesis.degree.levelDoctoral
thesis.degree.disciplineCell & Developmental Biology
thesis.degree.grantorVanderbilt University Graduate School
dc.creator.orcid0000-0002-0281-0467


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